matRad_compileMCsquareSparseReader

 Compiles the sparse mcsquare reader as mex interface 
 for the current platform

 call
   matRad_compileMCsquareSparseReader()
   matRad_compileMCsquareSparseReader(dest)
   matRad_compileMCsquareSparseReader(dest,sourceFolder)

 input:
   dest:           (optional) destination for mex file. Default: location of this
                   file
   sourceFolder:   (optional) path to folder. Default: location of this
                   file

 References

   https://aapm.onlinelibrary.wiley.com/doi/abs/10.1118/1.4943377
   http://www.openmcsquare.org/

 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

 Copyright 2020 the matRad development team. 
 
 This file is part of the matRad project. It is subject to the license 
 terms in the LICENSE file found in the top-level directory of this 
 distribution and at https://github.com/e0404/matRad/LICENSES.txt. No part 
 of the matRad project, including this file, may be copied, modified, 
 propagated, or distributed except according to the terms contained in the 
 LICENSE file.

 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

0001 function matRad_compileMCsquareSparseReader(dest,sourceFolder)
0002 % Compiles the sparse mcsquare reader as mex interface
0003 % for the current platform
0004 %
0005 % call
0006 %   matRad_compileMCsquareSparseReader()
0007 %   matRad_compileMCsquareSparseReader(dest)
0008 %   matRad_compileMCsquareSparseReader(dest,sourceFolder)
0009 %
0010 % input:
0011 %   dest:           (optional) destination for mex file. Default: location of this
0012 %                   file
0013 %   sourceFolder:   (optional) path to folder. Default: location of this
0014 %                   file
0015 %
0016 % References
0017 %
0018 %   https://aapm.onlinelibrary.wiley.com/doi/abs/10.1118/1.4943377
0019 %   http://www.openmcsquare.org/
0020 %
0021 % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
0022 %
0023 % Copyright 2020 the matRad development team.
0024 %
0025 % This file is part of the matRad project. It is subject to the license
0026 % terms in the LICENSE file found in the top-level directory of this
0027 % distribution and at https://github.com/e0404/matRad/LICENSES.txt. No part
0028 % of the matRad project, including this file, may be copied, modified,
0029 % propagated, or distributed except according to the terms contained in the
0030 % LICENSE file.
0031 %
0032 % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
0033 
0034  
0035 matRad_cfg = MatRad_Config.instance();
0036 
0037 if nargin < 1
0038     dest = fileparts(mfilename('fullpath'));
0039 end
0040 
0041 if nargin < 2
0042     sourceFolder = fileparts(mfilename('fullpath'));
0043 end
0044 
0045 if exist ('OCTAVE_VERSION', 'builtin')
0046     ccName = eval('mkoctfile -p CXX');
0047 else
0048     myCCompiler = mex.getCompilerConfigurations('C','Selected');
0049     ccName = myCCompiler.ShortName;
0050 end
0051 
0052 %These settings have only been tested for MSVC and g++. You may need to adapt for other compilers
0053 if ~isempty(strfind(ccName,'MSVC')) %Not use contains(...) because of octave
0054     flags{1,1} = 'COMPFLAGS';
0055     flags{1,2} = '/O2';
0056 else
0057     flags{1,1} = 'CXXFLAGS';
0058     flags{1,2} = '-std=c++11 -O2 -fPIC';
0059 end
0060 
0061 flagstring = '';
0062 
0063 %For Octave, the flags will be set in the environment, while they
0064 %will be parsed as string arguments in MATLAB
0065 for flag = 1:size(flags,1)
0066     if exist ('OCTAVE_VERSION', 'builtin')
0067         setenv(flags{flag,1},flags{flag,2});
0068     else
0069         flagstring = [flagstring flags{flag,1} '="' flags{flag,2} '" '];
0070     end
0071 end
0072 
0073 mexCall = ['mex -largeArrayDims ' flagstring ' ' sourceFolder filesep 'matRad_sparseBeamletsReaderMCsquare.cpp'];
0074 
0075 matRad_cfg.dispDebug('Compiler call: %s\n',mexCall);
0076 
0077 currDir = pwd;
0078 cd(dest);
0079 eval(mexCall);
0080 cd(currDir);
0081 
0082 end