matRad function that plots 3D structures of the volumes of interest
If the 3D-data is not stored in the CT, it will be commputed on the fly.
call
patches = matRad_plotVois3D(axesHandle,ct,cst,selection)
patches = matRad_plotVois3D(axesHandle,ct,cst,selection,cMap)
input
axesHandle handle to axes the structures should be displayed in
ct matRad ct struct which contains resolution
cst matRad cst struct
selection logicals defining the current selection of contours
that should be plotted. Can be set to [] to plot
all non-ignored contours.
cMap optional argument defining the colormap, default are the
colors stored in the cst
output
patches patch objects created by the matlab 3D visualization
References
-
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Copyright 2015 the matRad development team.
This file is part of the matRad project. It is subject to the license
terms in the LICENSE file found in the top-level directory of this
distribution and at https://github.com/e0404/matRad/LICENSES.txt. No part
of the matRad project, including this file, may be copied, modified,
propagated, or distributed except according to the terms contained in the
LICENSE file.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%0001 function patches = matRad_plotVois3D(axesHandle,ct,cst,selection,cMap) 0002 % matRad function that plots 3D structures of the volumes of interest 0003 % If the 3D-data is not stored in the CT, it will be commputed on the fly. 0004 % 0005 % call 0006 % patches = matRad_plotVois3D(axesHandle,ct,cst,selection) 0007 % patches = matRad_plotVois3D(axesHandle,ct,cst,selection,cMap) 0008 % 0009 % input 0010 % axesHandle handle to axes the structures should be displayed in 0011 % ct matRad ct struct which contains resolution 0012 % cst matRad cst struct 0013 % selection logicals defining the current selection of contours 0014 % that should be plotted. Can be set to [] to plot 0015 % all non-ignored contours. 0016 % cMap optional argument defining the colormap, default are the 0017 % colors stored in the cst 0018 % 0019 % output 0020 % patches patch objects created by the matlab 3D visualization 0021 % 0022 % References 0023 % - 0024 % 0025 % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 0026 % 0027 % Copyright 2015 the matRad development team. 0028 % 0029 % This file is part of the matRad project. It is subject to the license 0030 % terms in the LICENSE file found in the top-level directory of this 0031 % distribution and at https://github.com/e0404/matRad/LICENSES.txt. No part 0032 % of the matRad project, including this file, may be copied, modified, 0033 % propagated, or distributed except according to the terms contained in the 0034 % LICENSE file. 0035 % 0036 % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 0037 0038 if size(cst,2) < 8 0039 cst = matRad_computeAllVoiSurfaces(ct,cst); 0040 end 0041 0042 %Use stored colors or colormap? 0043 if nargin < 5 || isempty(cMap) 0044 cMapScale = size(cMap,1)-1; 0045 %determine colors 0046 voiColors = cMap(round(linspace(1,cMapScale,size(cst,1))),:); 0047 else 0048 for i = 1:size(cst,1) 0049 voiColors(i,:) = cst{i,5}.visibleColor; 0050 end 0051 end 0052 0053 if nargin < 4 || isempty(selection) || numel(selection) ~= size(cst,1) 0054 selection = logical(ones(size(cst,1),1)); 0055 end 0056 0057 cMapScale = size(cMap,1)-1; 0058 0059 axes(axesHandle); 0060 wasHold = ishold(); 0061 0062 hold(axesHandle,'on'); 0063 0064 numVois = size(cst,1); 0065 0066 patches = cell(0); 0067 0068 for voiIx = 1:numVois 0069 if selection(voiIx) && ~strcmp(cst{voiIx,3},'IGNORED') 0070 patches{voiIx} = patch(cst{voiIx,8}{1},'VertexNormals',cst{voiIx,8}{2},'FaceColor',voiColors(voiIx,:),'EdgeColor','none','FaceAlpha',0.4,'Parent',axesHandle); 0071 end 0072 end 0073 0074 if ~wasHold 0075 hold(axesHandle,'off'); 0076 end 0077 0078 0079 end